2011

166. S. Qin, X. Pang, and H.-X. Zhou (2011). Automated prediction of protein association rate constants. Structure 19, 1744-1751.pdf  Supplementary Information

165. H.-X. Zhou (2011). Mechanistic insight into the H₂O/D₂O isotope effect in the proton transport of the influenza virus M2 protein. J. Membr. Biol. 244:93-96.pdf

164. J. L. Barreda and H.-X. Zhou (2011). Theory and simulation of diffusion-influenced, stochastically gated ligand binding to buried sites. J. Chem. Phys. 135, 145101.pdf  JCP

163. S. J. Fleishman, T. A. Whitehead, E.-M. Strauch, J. E. Corn, S. Qin, H.-X. Zhou, J. C. Mitchell, O. N. Demerdash, M. Takeda-Shitaka, G. Terashi, I. H. Moal, X. Li, P. A. Bates, M. Zacharias, H. Park, J. Ko, H. Lee, C. Seok, T. Bourquard, J. Bernauer, A. Poupon, J. Aze, S. Soner, S. K. Ovali, P. Ozbek, N. Ben Tal, T. Haliloglu, H. Hwang, T. Vreven, B. G. Pierce, Z. Weng, L. Perez-Cano, C. Pons, J. Fernadez-Recio, F. Jiang, F. Yang, X. Gong, L. Cao, X. Xu, B. Liu, P. Wang, C. Li, C. Wang, C. H. Robert, M. Guharoy, S. Liu, Y. Huang, L. Li , D. Guo, Y. Chen, Y. Xiao, N. London, Z. Itzhaki, O. Schueler-Furman, Y. Inbar, V. Patapov, M. Cohen, G. Schreiber, Y. Tsuchiya, E. Kanamori, D. M. Standley, H. Nakamura, K. Kinoshita, C. M. Driggers, R. G. Hall, J. L. Morgan, V. L. Hsu, J. Zhan, Y. Yang, Y. Zhou, P. L. Kastritis, A. M. J. J. Bonvin, W. Zhang, C. J. Camacho, K. P. Kilambi, A. Sircar, J. J. Gray, M, Ohue, N. Uchikoga, Y. Matsuzaki, T. Ishida, Y. Akiyama, R. Khashan, S. Bush, D. Fouches, A. Tropsha, J. Esquivel-Rodrigez, D. Kihara, P. B. Stranges, R. Jacak, B. Kuhlman, S. Huang, X. Zou, S. J. Wodak, J. Janin, and D. Baker (2011). Community-wide assessment of protein-interface modeling suggests improvements to design methodology. J. Mol. Biol. 414, 289-302.pdf

162. A. M. Berezhkovskii, A. Szabo, and H.-X. Zhou (2011). Diffusion-influenced ligand binding to buried sites in macromolecules and transmembrane channels. J. Chem. Phys. 135, 075103.pdf

161. X. Pang, S. Qin, and H.-X. Zhou (2011). Rationalizing 5,000-fold differences in receptor-binding rate constants of four cytokines. Biophys. J. 101, 1175-1183.pdf

160. H. Dong and H.-X. Zhou (2011). Atomistic mechanism for the activation and desensitization of an AMPA-subtype glutamate receptor. Nat. Commun. 2, 354.pdf

159. H.-X. Zhou (2011). Rapid search for specific sites on DNA through conformational switch of nonspecifically bound proteins. Proc. Natl. Acad. Sci. USA. 108, 8651-8656.pdf  Supporting Text  Faculty of 1000 Evaluation

158. H.-X. Zhou (2011). Equivalence of two approaches for modeling ion permeation through a transmembrane channel with an internal binding site. J. Chem. Phys. 134, 135101.pdf  JCP

157. H.-X. Zhou (2011). Q&A: What is biophysics? BMC Biology 9, 13.pdf

156. J. L. Barreda and H.-X. Zhou (2011). A solvable model for the diffusion and reaction of neurotransmitters in a synaptic junction. BMC Biophys. 4, 5.pdf

155. L. Cai and H.-X. Zhou (2011). Theory and simulation on the kinetics of protein-ligand binding coupled to conformational change. J. Chem. Phys. 134, 105101.pdf

154. H.-X. Zhou (2011). A theory for the proton transport of the influenza virus M2 protein: extensive test against conductance data. Biophys. J. 100, 912-921.pdf

153. S. Qin and H.-X. Zhou (2011). Structural models of protein-DNA complexes based on interface prediction and docking. Curr. Protein Pept. Sci. 12, 531-539.pdf

152. T. A. Cross, M. Sharma, M. Yi, and H.-X. Zhou (2011). Influence of solubilizing environments on membrane protein structures. Trends Biochem. Sci. 36, 117-125.pdf

151. M. Sharma, C. Li, D. D Busath, H.-X. Zhou, and T. A. Cross (2011). Drug sensitivity, drug-resistant mutations, and structures of the conductance domains of three viral porins. BBA-Biomembranes 1808, 538-546.pdf